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Services tagged with "organism"

results 1 to 10 of 15

 
  • TfscanService  

    by vt.edu
    United States
    Wraps the tfscan transcription factor binding site prediction program from the EMBOSS suite. The TRANSFAC Database is a database of eukaryotic cis-ac... (community description)
    Tags:
    • prediction,
    • insect,
    • list,
    • vertebrates,
    • human,
    • yeast,
    • suite,
    • EMBOSS suite,
    • university,
    • element,
    • binding site,
    • sequence,
    • DNA,
    • plant,
    • trans-acting factor,
    • EMBOSS,
    • eukaryotic,
    • bioinformatics,
    • transcription factor,
    • matching,
    • cis-acting,
    • fungi,
    • free,
    • protein,
    • taxonomic group,
    • TRANSFAC,
    • database,
    • organism,
    • regulatory,
    • tfscan,
    • wrapping
  • PimlService  

    by vt.edu
    United States
    A database of background information on pathogens from both the CDC's and NIAID's A, B, and C pathogen lists (CDC list, NIAID list). Includes taxonomi... (community description)
    Tags:
    • university,
    • organism,
    • taxonomy,
    • list,
    • NIAID,
    • host-list,
    • CDC,
    • work,
    • bioinformatics,
    • epidemiology,
    • pathogen,
    • host,
    • labwork,
    • free,
    • database,
    • laboratory,
    • pathogene
  • RfamService  

    by vt.edu
    United States
    Uses the Linux Beowulf cluster at VBI's Core Computational Facility to run BLASTN, BLASTP, and translating BLAST analyses on multiple organism databas... (community description)
    Tags:
    • Rfam,
    • database,
    • BLAST,
    • analysis,
    • bioinformatics,
    • BLASTN,
    • RNA family,
    • simultaneous,
    • BLASTP,
    • university,
    • organism,
    • translation,
    • free
  • EmbldasService  

    by vt.edu
    United States
    Utilizes a European Bioinformatics Institute (EBI)'s XEMBL webservice to retrieve organism DNA and annotations from EMBL database. XEMBL returns the ... (community description)
    Tags:
    • DNA,
    • EMBL,
    • bioinformatics,
    • database,
    • university,
    • free,
    • organism,
    • XEMBL,
    • annotation,
    • embldas
  • FgeneshService  

    by vt.edu
    United States
    The FGENESH webservice is a general-purpose gene identification webservice that analyzes genomic DNA sequences from a variety of organisms including h... (community description)
    Tags:
    • FGENESH,
    • DNA,
    • university,
    • property,
    • vertebrate,
    • genome,
    • organism,
    • sequence,
    • probabilistic model,
    • bioinformatics,
    • invertebrate,
    • human,
    • plant,
    • identification,
    • gene,
    • free,
    • structural,
    • restricted,
    • compositional
  • BlocksService  

    by vt.edu
    United States
    The Blocks webservice compares a protein sequence against BLOCKS database, and returns information of the block hit for the query protein. see: http:/... (community description)
    Tags:
    • DAS/1,
    • Aspergillus,
    • interpolation,
    • bioinformatics,
    • Markov model,
    • block hit,
    • protein,
    • organism,
    • sequence,
    • university,
    • comparison,
    • free,
    • database,
    • Arabidopsis thaliana,
    • BLOCKS
  • MummerpatricService  

    by vt.edu
    United States
    Wraps the MUMmer 3.0 program developed by The Institute for Genomic Research (TIGR) for doing large sequence comparisons. The database contains annot... (community description)
    Tags:
    • organism,
    • suffix-tree,
    • match,
    • wrapping ,
    • DNA,
    • reverse,
    • bioinformatics,
    • annotation,
    • sequence comparison,
    • alignment,
    • genome,
    • comparison,
    • university,
    • complement,
    • patric project,
    • identification,
    • mismatch,
    • reverse complement,
    • subsequence,
    • protein,
    • database,
    • free,
    • sequence
  • GenscanService  

    by vt.edu
    United States
    Wraps the GENSCAN program for doing gene prediction. It analyzes genomic DNA sequences from a variety of organisms including humans and other vertebr... (community description)
    Tags:
    • plant,
    • vertebrate,
    • restricted,
    • invertebrate,
    • probabilistic model,
    • organism,
    • region,
    • TATA box,
    • density,
    • genome,
    • model parameter,
    • free,
    • GENSCAN,
    • bioinformatics,
    • DNA,
    • human,
    • splice site,
    • DAS/1,
    • size,
    • sequence,
    • prediction,
    • analysis,
    • property,
    • structure,
    • exon,
    • gene,
    • university
  • TimelogicblastServic...  

    by vt.edu
    United States
    Uses the Timelogic Server at VBI's Core Computational Facility to run BLASTN, BLASTP, and translating BLAST analyses on multiple organism databases si... (community description)
    Tags:
    • internal,
    • BLASTN,
    • BLAST,
    • mulitple organism,
    • timelogic server,
    • BLASTP,
    • translation,
    • simultaneous,
    • organism,
    • bioinformatics,
    • simultan,
    • university,
    • analysis,
    • combination,
    • BLAST XML format,
    • XML,
    • database,
    • free
  • BlastbtService  

    by vt.edu
    United States
    Uses the Linux Beowulf cluster at VBI's Core Computational Facility to run BLASTN, BLASTP, and translating BLAST analyses on multiple organism databas... (community description)
    Tags:
    • simultaneous,
    • BLAST,
    • BLAST XML format,
    • combination,
    • database,
    • organism,
    • analysis,
    • university,
    • translation,
    • bioinformatics,
    • BLASTP,
    • free,
    • BLASTN
 
 
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